商连光课题组

商连光课题组

Lianguang Shang Lab

课题组长

商连光，研究员，广东省杰出青年科学基金获得者，从事水稻群体泛基因组、表观组、转录组、表型组等多组学大数据整合挖掘，数据库构建，解析水稻复杂农艺性状的遗传基础，大数据智能育种等前沿研究。组装了251份高质量的水稻基因组，构建了目前植物中群体规模最大、基因组充分注释、稻属中最为系统的超级泛基因组，并利用超级泛基因组克隆了多个控制重要农艺性状的优异等位基因。在Science等杂志发表论文50余篇，其中以第一或通讯作者在Cell Research、Molecular Plant、Trends in Plant Science、Plant Biotechnology Journal、New Phytologist等高水平杂志上共发表30余篇SCI论文。获软件著作权2项，审定新品种3个。人社部国家首批“博士后创新人才支持计划”入选者，获得国家自然科学基金、广东省自然科学基金、深圳市科技计划、中国博士后科学基金一等资助等多个项目资助。担任Molecular Plant、Plant Biotechnology Journal等多个高水平SCI期刊审稿人。

学习经历

2016.7-2019.7    中国农业科学院（深圳）农业基因组研究所 博士后

2010.9-2016.6     中国农业大学 博士

工作经历

2021.12-至今 中国农业科学院（深圳）农业基因组研究所 研究员

2019.6-2021.11      中国农业科学院（深圳）农业基因组研究所 副研究员

2016.7-2019.5      中国农业科学院（深圳）农业基因组研究所 助理研究员

所获荣誉

2019年10月，深圳市高层次人才

2016年8月，入选国家人社部首批“博士后创新人才支持计划”

2016年6月，北京市优秀毕业生

招聘信息

常年招访问学者、博士后和客座研究生，欢迎对水稻群体多组学数据整合和功能组学研究方向感兴趣的优秀科研人员和同学申请。

欢迎各高校和研究单位同学来本课题组实习，欢迎报考本实验室博士和硕士研究生。

Email: shanglianguang@caas.cn

近五年发表论文（^#第一作者，*通讯作者）：

2022年

1. Lianguang Shang^#*, Xiaoxia Li^#, Huiying He^#, Qiaoling Yuan^#, Yanni Song^#, Zhaoran Wei^#, Hai Lin^#, Min Hu^#, Fengli Zhao^#, Chao Zhang, Yuhua Li, Hongsheng Gao, Tianyi Wang, Xiangpei Liu, Hong Zhang, Ya Zhang, Shuaimin Cao, Xiaoman Yu, Bintao Zhang, Yong Zhang, Yiqing Tan, Mao Qin, Cheng Ai, Yingxue Yang, Bin Zhang, Zhiqiang Hu, Hongru Wang, Yang Lv, Yuexing Wang, Jie Ma, Quan Wang, Hongwei Lu, Zhe Wu, Shanlin Liu, Zongyi Sun, Hongliang Zhang, Longbiao Guo, Zichao Li, Yongfeng Zhou, Jiayang Li, Zuofeng Zhu*, Guosheng Xiong*, Jue Ruan*, Qian Qian*. A super pan-genomic landscape of rice.  Cell Research , 2022. doi.org/10.1038/s41422-022-00685-z (IF 46.297)

2. Yanqing Sun^#, Lianguang Shang^#, QianHao Zhu, Longjiang Fan*, Longbiao Guo*. Twenty years of plant genome sequencing: achievements and challenges.  Trends in Plant Science , 2022, 27(4):391-401. doi: 10.1016/j.tplants.2021.10.006. (IF 22.012)

3. Ning Yan^#*, Ting Yang^#, Xiu-Ting Yu^#, Lianguang Shang^#, Deping Guo, Yu Zhang, Lin Meng, Qianqian Qi, Yali Li, Yongmei Du, Xinmin Liu, Xiaolong Yuan, Peng Qin, Jie Qiu, Qian Qian*, Zhongfeng Zhang*. Chromosome-level genome assembly of  Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis.  Communications Biology , 2022, 5(1):36. doi.org/10.1038/s42003-021-02993-3. (IF 6.548)

4. Shaobo Wei^#, Xia Li^#, Zefu Lu, Hui Zhang, Xiangyuan Ye, Yujie Zhou, Jing Li, Yanyan Yan, Hongcui Pei, Fengying Duan, Danying Wang, Song Chen, Peng Wang, Chao Zhang, Lianguang Shang, Yue Zhou, Peng Yan, Ming Zhao, Jirong Huang, Ralph Bock, Qian Qian, Wenbin Zhou*, A transcriptional regulator that boosts grain yields and shortens the growth duration of rice.  Science , 2022. (IF 63.714)

2021年

1. Jing Xu^#, Lianguang Shang^#, Jiajia Wang^#, Minmin Chen, Xue Fu, Huiying He, Zian Wang, Dali Zeng, Li Zhu, Jiang Hu, Chao Zhang, Guang Chen, Zhenyu Gao, Weiwei Zou, Deyong Ren, Guojun Dong, Lan Shen, Qiang Zhang, Longbiao Guo, Qian Qian*, and Guangheng Zhang*, The  SEEDLING BIOMASS 1  allele from indica rice enhances yield performance under low-nitrogen environments.  Plant Biotechnology Journal , 2021, 19(9):1681-1683. doi: 10.1111/pbi.13642. (IF 13.263)

2. Jiyue Qiao^#, Hongzhen Jiang^#, Yuqing Lin^#, Lianguang Shang^#, Mei Wang, Dongming Li, Xiangdong Fu, Markus Geisler, Yanhua Qi*, Zhenyu Gao*, Qian Qian*, A Novel miR167a-ARF6-AUX3 Pathway Regulates Grain Length and Weight in Rice.  Molecular Plant , 2021, 14(10):1683-1698. doi: 10.1016/j.molp.2021.06.023. (IF 21.949)

3. Yang Lv^#, Jie Ma^#, Yueying Wang^#, Quan Wang, Xueli Lu, Haitao Hu, Qian Qian, Longbiao Guo*, and Lianguang Shang*, Loci and natural alleles for low-nitrogen-induced growth response revealed by GWAS analysis in rice ( Oryza sativa L.).  Frontiers in Plant Science , 2021, 12:770736. doi: 10.3389/fpls.2021.770736. (IF 6.627)

4. Zhaoran Wei^#, Qiaoling Yuan^#, Hai Lin^#, Xiaoxia Li, Chao Zhang, Hongsheng Gao, Bin Zhang, Huiying He, Tianjiao Liu, Zhang Jie, Xu Gao, Shandang Shi, Bo Wang, Zhenyu Gao, Lingrang Kong, Qian Qian*, Lianguang Shang*. Linkage analysis, GWAS, transcriptome analysis to identify candidate genes for rice seedlings in response to high temperature stress.  BMC Plant Biology , 2021, 21(1):85. doi: 10.1186/s12870-021-02857-2. (IF 5.26)

5. Jianping Yu^#, Chaolei Liu^#, Hai Lin^#, Bin Zhang, Xiaoxia Li, Qiaoling Yuan, Tianjiao Liu, Huiying He, Zhaoran Wei, Shilin Ding, Chao Zhang, Hongsheng Gao, Longbiao Guo, Quan Wang, Qian Qian*, Lianguang Shang*. Loci and natural alleles for cadmium-mediated growth responses revealed by a genome wide association study and transcriptome analysis in rice.  BMC Plant Biology , 2021, 21(1):374. doi: 10.1186/s12870-021-03145-9. (IF 5.26)

6. Jiangfan Guo^#, Wei Li^#, Lianguang Shang, Yuguang Wang, Peng Yan, Youhuang Bai, Xiaowen Da, kai Wang, Qian Qian, Ruirui Jiang, Chuanzao Mao*, Xiaorong Mo*,  OsbHLH98 regulates leaf angle in rice through transcriptional repression of  OsBUL1 .  New Phytologist , 2021, 230(5):1953-1966. doi: 10.1111/nph.17303. (IF 10.323)

2020年

1. Yuexing Wang^#, Lianguang Shang^#, Hong Yu^#, Longjun Zeng^#, Jiang Hu, Shen Ni, Yuchun Rao, Sanfeng Li, Jinfang Chu, Xiangbing Meng, Lei Wang, Ping Hu, Shujing Kang, Minghao Qu, Hai Lin, Xingming Hu, Hongqi Chen, Bing Wang, Zhenyu Gao, Dali Zeng, Xudong Zhu, Guosheng Xiong*, Jiayang Li*, Qian Qian*, A strigolactones biosynthesis gene contributed to the Green Revolution in rice.  Molecular Plant , 2020, 13(6): 923-932. doi: 10.1016/j.molp.2020.03.009. (IF 13.164)

2. Banpu Ruan^#, Lianguang Shang^#, Bin Zhang, Jiang Hu, Yuexing Wang, Anpeng Zhang, Chaolei Liu, Youlin Peng, Li Zhu, Deyong Ren, Guojun Dong, Guangheng Zhang, Dali Zeng, Longbiao Guo, Zhenyu Gao* and Qian Qian*, Natural variation in the promoter of  TGW2 determines grain width and weight in rice.  New Phytologist , 2020, 227(2):629-640. doi: 10.1111/nph.16540. (IF 10.152)

3. Sanfeng Li^#, Lan Shen^#, Ping Hu, Xianmei Wu, Qiaoling Yuan, Yuchun Rao, Qian Qian, Kejian Wang, Xudong Zhu, Lianguang Shang*, Yuexing Wang*, A Method for Effectively Overcoming Tight Functional Linkage Between Genes in Rice by CRISPR/Cas9 System.  Rice Science , 2020, 27(3): 180-183. doi:10.1016/j.rsci.2020.04.002. (IF 3.333)

4. Jun Lv^#, Lianguang Shang^#, Yun Chen^#, Yao Han, Xiaoyan Yang, Shuzhang Xie, Wenqin Bai, Mingyu Hu, Hong Wu, Kairong Lei, Yanan Yang, Shengzhen Ge, Hai Phuong Trinh, Yi Zhang, Longbiao Guo*, Zhongwei Wang,  OsSLC1 encodes a pentatricopeptide repeat protein essential for early chloroplast development and seedling survival.  Rice , 2020 13(1):25. doi: 10.1186/s12284-020-00385-5. (IF 4.783)

5. Hongsheng Gao^#, Chao Zhang^#, Huiying He^#, Tianjiao Liu, Bin Zhang, Hai Lin, Xiaoxia Li, Zhaoran Wei, Qiaoling Yuan, Quan Wang, Chunyan Yu*, Lianguang Shang*. Loci and alleles for submergence responses revealed by GWAS and transcriptional analysis in rice.  Molecular Breeding , (2020) 40:75. doi: 10.1007/s11032-020-01160-6. (IF 2.589)

2019年

1. Bin Zhang^#, Lianguang Shang^#, Banpu Ruan, Anpeng Zhang, Shenglong Yang, Hongzhen Jiang, Chaolei Liu, Kai Hong, Hai Lin, Zhenyu Gao, Jiang Hu, Dali Zeng, Longbiao Guo, Qian Qian*, Development of three sets of high-throughput genotyped rice chromosome segment substitution lines and QTL mapping for eleven traits.  Rice , 2019, 12(33):1-15. doi: 10.1186/s12284-019-0293-y. (IF 3.912)

2. Chaolei Liu^#, Zhenyu Gao^#, Lianguang Shang^#, Changhong Yang, Banpu Ruan, Dali Zeng, Longbiao Guo, Fangjie Zhao, Chaofeng Huang*, Qian Qian*, Natural variation in the promoter of  OsHMA3 contributes to differential grain cadmium accumulation between  Indica and  Japonica rice.  Journal of Integrative Plant Biology , 2019, 62(3):314-329. doi: 10.1111/jipb.12794. (IF 4.885)

3. Yang Lv^#, Yueying Wang^#, Jahan Noushin, Haitao Hu, Ping Chen, Lianguang Shang, Haiyan Lin, Guojun Dong, Jiang Hu, Li Zhu, Qian Qian, Yu Zhang*, Longbiao Guo*, Genome-wide association analysis and allelic mining of grain.shape related traits in rice.  Rice Science , 2019, 26(5): 2. doi:10.1016/j.rsci.2018.09.002. (IF 3.162)

4. Zhenyu Gao^#, Yufeng Wang^#, Guang Chen^#, Anpeng Zhang, Shenglong Yang, Lianguang Shang, Danying Wang, Banpu Ruan, Chaolei Liu, Hongzhen Jiang, Guojun Dong, Li Zhu, Jiang Hu, Guangheng Zhang, Dali Zeng, Longbiao Guo, Guohua Xu, Sheng Teng, Nicholas P Harberd*, Qian Qian*, The indica nitrate reductase gene  OsNR2 allele enhances rice yield potential and nitrogen use efficiency.  Nature Communications , 2019, 10(1):5207. doi: 10.1038/s41467-019-13110-8. (IF 12.121)

2018年

1. Shikai Hu, Xingming Hu, Jiang Hu, Lianguang Shang, Guojun Dong, Dali Zeng, Longbiao Guo, Qian Qian*, Xiaowei, a new rice germplasm for large-scale indoor research.  Molecular Plant , 2018, 11(11):1418-1420. doi: 10.1016/j.molp.2018.08.003. (IF 10.812)

PI

Lianguang Shang, Principle Investigator, Professor

Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences (CAAS)

Address: No.97 Buxin Road, Dapeng New District, Shenzhen 518120, China

Email: shanglianguang@caas.cn    

Education

2016.7-2019.7    Agricultural Genomics Institute at Shenzhen-CAAS  Postdoctoral

2010.9-2016.6    China Agricultural University                    Ph.D

­Working Experience

2021.12-Present   Agricultural Genomics Institute at Shenzhen-CAAS   Principal Investigator

2019.6-2021.11   Agricultural Genomics Institute at Shenzhen-CAAS  Associate Professor

2016.7-2019.5    Agricultural Genomics Institute at Shenzhen-CAAS  Research Associate

Achievements

2019.10   High-level professional in Shenzhen

2016.08   Postdoctoral innovative talents support program

2016.06   Outstanding graduate of Beijing

Our group focused on the genetic basis of complex agronomic traits of rice and major scientific questions on molecular breeding. We integrated comprehensive research methods of multi-omics such as pan-genome, epigenome, transcriptome, and phenotype of rice populations to conduct big data mining and database construction. The leader of our research group, as the first or corresponding author has published a total of 30 SCI papers in high-level journals such as  Cell Research ,  Trends in Plant Science ,  Molecular Plant ,  Plant Biotechnology Journal , and  New Phytologist , etc. Two software copyrights have been acquired, and three rice new varieties have been approved. He is selectee of the first batch "Postdoctoral Innovative Talents Support Program" of the Ministry of Human Resources and Social Security. Additionally, our group has received many project grants from the National Natural Science Foundation of China (NSFC)), the Natural Science Foundation of Guangdong Province, the Shenzhen Science and Technology Program, and the first class of China Postdoctoral Science Foundation. He also served as a reviewer for several high-level SCI journals.

Recruitment

Postdoctoral, visiting scholars and graduate students, and excellent researchers who are interested in our research direction of multi-omics data integration and functional omics of rice population are welcome to apply all year round.

Welcome students from all universities and research institutes to come to our research group for internship, or apply for doctoral and master students in our laboratory.